Diversification of Genes Encoding Granule-Bound Starch Synthase in Monocots and Dicots Is Marked by Multiple Genome-Wide Duplication Events
Identifieur interne : 001354 ( Main/Exploration ); précédent : 001353; suivant : 001355Diversification of Genes Encoding Granule-Bound Starch Synthase in Monocots and Dicots Is Marked by Multiple Genome-Wide Duplication Events
Auteurs : Jun Cheng [République populaire de Chine] ; Muhammad Awais Khan [États-Unis] ; Wen-Ming Qiu [République populaire de Chine] ; Jing Li [République populaire de Chine] ; Hui Zhou [République populaire de Chine] ; Qiong Zhang [République populaire de Chine] ; Wenwu Guo [République populaire de Chine] ; Tingting Zhu [République populaire de Chine] ; Junhua Peng [République populaire de Chine] ; Fengjie Sun [États-Unis] ; Shaohua Li [République populaire de Chine] ; Schuyler S. Korban [États-Unis] ; Yuepeng Han [République populaire de Chine]Source :
- PLoS ONE [ 1932-6203 ] ; 2012.
English descriptors
- KwdEn :
- Angiosperms (enzymology), Angiosperms (genetics), Base Sequence, Chromosome Duplication (genetics), Chromosome Duplication (physiology), Citrus sinensis (enzymology), Citrus sinensis (genetics), Evolution, Molecular, Gene Expression Regulation, Plant, Genetic Speciation, Genetic Variation (physiology), Genome, Plant (genetics), Malus (enzymology), Malus (genetics), Molecular Sequence Data, Phylogeny, Plant Leaves (chemistry), Plant Leaves (enzymology), Plant Leaves (genetics), Plant Leaves (metabolism), Prunus (enzymology), Prunus (genetics), Starch Synthase (genetics).
- MESH :
- chemical , genetics : Starch Synthase.
- chemistry : Plant Leaves.
- enzymology : Angiosperms, Citrus sinensis, Malus, Plant Leaves, Prunus.
- genetics : Angiosperms, Chromosome Duplication, Citrus sinensis, Genome, Plant, Malus, Plant Leaves, Prunus.
- metabolism : Plant Leaves.
- physiology : Chromosome Duplication, Genetic Variation.
- Base Sequence, Evolution, Molecular, Gene Expression Regulation, Plant, Genetic Speciation, Molecular Sequence Data, Phylogeny.
Abstract
Starch is one of the major components of cereals, tubers, and fruits. Genes encoding granule-bound starch synthase (GBSS), which is responsible for amylose synthesis, have been extensively studied in cereals but little is known about them in fruits. Due to their low copy gene number,
Url:
DOI: 10.1371/journal.pone.0030088
PubMed: 22291904
PubMed Central: 3264551
Affiliations:
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Le document en format XML
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Khan</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Qiu, Wen Ming" sort="Qiu, Wen Ming" uniqKey="Qiu W" first="Wen-Ming" last="Qiu">Wen-Ming Qiu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, 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Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Qiong" sort="Zhang, Qiong" uniqKey="Zhang Q" first="Qiong" last="Zhang">Qiong Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Wenwu" sort="Guo, Wenwu" uniqKey="Guo W" first="Wenwu" last="Guo">Wenwu Guo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Tingting" sort="Zhu, Tingting" uniqKey="Zhu T" first="Tingting" last="Zhu">Tingting Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Peng, Junhua" sort="Peng, Junhua" uniqKey="Peng J" first="Junhua" last="Peng">Junhua Peng</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, 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China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Korban, Schuyler S" sort="Korban, Schuyler S" uniqKey="Korban S" first="Schuyler S." last="Korban">Schuyler S. 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Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Khan, Muhammad Awais" sort="Khan, Muhammad Awais" uniqKey="Khan M" first="Muhammad Awais" last="Khan">Muhammad Awais Khan</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Qiu, Wen Ming" sort="Qiu, Wen Ming" uniqKey="Qiu W" first="Wen-Ming" last="Qiu">Wen-Ming Qiu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Li, Jing" sort="Li, Jing" uniqKey="Li J" first="Jing" last="Li">Jing Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Hui" sort="Zhou, Hui" uniqKey="Zhou H" first="Hui" last="Zhou">Hui Zhou</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Zhang, Qiong" sort="Zhang, Qiong" uniqKey="Zhang Q" first="Qiong" last="Zhang">Qiong Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Wenwu" sort="Guo, Wenwu" uniqKey="Guo W" first="Wenwu" last="Guo">Wenwu Guo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><addr-line>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Horticultural Plant Biology (Ministry of Education), Huazhong Agricultural University, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Tingting" sort="Zhu, Tingting" uniqKey="Zhu T" first="Tingting" last="Zhu">Tingting Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Peng, Junhua" sort="Peng, Junhua" uniqKey="Peng J" first="Junhua" last="Peng">Junhua Peng</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Sun, Fengjie" sort="Sun, Fengjie" uniqKey="Sun F" first="Fengjie" last="Sun">Fengjie Sun</name><affiliation wicri:level="2"><nlm:aff id="aff4"><addr-line>School of Science and Technology, Georgia Gwinnett College, Lawrenceville, Georgia, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Science and Technology, Georgia Gwinnett College, Lawrenceville, Georgia</wicri:regionArea><placeName><region type="state">Géorgie (États-Unis)</region></placeName></affiliation></author><author><name sortKey="Li, Shaohua" sort="Li, Shaohua" uniqKey="Li S" first="Shaohua" last="Li">Shaohua Li</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author><author><name sortKey="Korban, Schuyler S" sort="Korban, Schuyler S" uniqKey="Korban S" first="Schuyler S." last="Korban">Schuyler S. Korban</name><affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, Illinois</wicri:regionArea><placeName><region type="state">Illinois</region></placeName></affiliation></author><author><name sortKey="Han, Yuepeng" sort="Han, Yuepeng" uniqKey="Han Y" first="Yuepeng" last="Han">Yuepeng Han</name><affiliation wicri:level="1"><nlm:aff id="aff1"><addr-line>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei, China</addr-line></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden of the Chinese Academy of Sciences, Wuhan, Hubei</wicri:regionArea><wicri:noRegion>Hubei</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Angiosperms (enzymology)</term><term>Angiosperms (genetics)</term><term>Base Sequence</term><term>Chromosome Duplication (genetics)</term><term>Chromosome Duplication (physiology)</term><term>Citrus sinensis (enzymology)</term><term>Citrus sinensis (genetics)</term><term>Evolution, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Genetic Speciation</term><term>Genetic Variation (physiology)</term><term>Genome, Plant (genetics)</term><term>Malus (enzymology)</term><term>Malus (genetics)</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Plant Leaves (chemistry)</term><term>Plant Leaves (enzymology)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (metabolism)</term><term>Prunus (enzymology)</term><term>Prunus (genetics)</term><term>Starch Synthase (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Starch Synthase</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Angiosperms</term><term>Citrus sinensis</term><term>Malus</term><term>Plant Leaves</term><term>Prunus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Angiosperms</term><term>Chromosome Duplication</term><term>Citrus sinensis</term><term>Genome, Plant</term><term>Malus</term><term>Plant Leaves</term><term>Prunus</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Chromosome Duplication</term><term>Genetic Variation</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Evolution, Molecular</term><term>Gene Expression Regulation, Plant</term><term>Genetic Speciation</term><term>Molecular Sequence Data</term><term>Phylogeny</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Starch is one of the major components of cereals, tubers, and fruits. Genes encoding granule-bound starch synthase (GBSS), which is responsible for amylose synthesis, have been extensively studied in cereals but little is known about them in fruits. Due to their low copy gene number, <italic>GBSS</italic> genes have been used to study plant phylogenetic and evolutionary relationships. In this study, <italic>GBSS</italic> genes have been isolated and characterized in three fruit trees, including apple, peach, and orange. Moreover, a comprehensive evolutionary study of <italic>GBSS</italic> genes has also been conducted between both monocots and eudicots. Results have revealed that genomic structures of <italic>GBSS</italic> genes in plants are conserved, suggesting they all have evolved from a common ancestor. In addition, the <italic>GBSS</italic> gene in an ancestral angiosperm must have undergone genome duplication ∼251 million years ago (MYA) to generate two families, <italic>GBSSI</italic> and <italic>GBSSII</italic>. Both <italic>GBSSI</italic> and <italic>GBSSII</italic> are found in monocots; however, <italic>GBSSI</italic> is absent in eudicots. The ancestral <italic>GBSSII</italic> must have undergone further divergence when monocots and eudicots split ∼165 MYA. This is consistent with expression profiles of <italic>GBSS</italic> genes, wherein these profiles are more similar to those of <italic>GBSSII</italic> in eudicots than to those of <italic>GBSSI</italic> genes in monocots. In dicots, <italic>GBSSII</italic> must have undergone further divergence when rosids and asterids split from each other ∼126 MYA. Taken together, these findings suggest that it is <italic>GBSSII</italic> rather than <italic>GBSSI</italic> of monocots that have orthologous relationships with <italic>GBSS</italic> genes of eudicots. Moreover, diversification of <italic>GBSS</italic> genes is mainly associated with genome-wide duplication events throughout the evolutionary course of history of monocots and eudicots.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Nakamura, Y" uniqKey="Nakamura Y">Y Nakamura</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zeeman, Sc" uniqKey="Zeeman S">SC Zeeman</name></author><author><name sortKey="Kossmann, J" uniqKey="Kossmann J">J Kossmann</name></author><author><name sortKey="Smith, Am" uniqKey="Smith A">AM Smith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Takahiro, N" uniqKey="Takahiro N">N Takahiro</name></author><author><name sortKey="Nishiba, Y" uniqKey="Nishiba Y">Y Nishiba</name></author><author><name sortKey="Sato, T" uniqKey="Sato T">T Sato</name></author><author><name sortKey="Suda, I" uniqKey="Suda I">I 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first="Wenwu" last="Guo">Wenwu Guo</name><name sortKey="Han, Yuepeng" sort="Han, Yuepeng" uniqKey="Han Y" first="Yuepeng" last="Han">Yuepeng Han</name><name sortKey="Li, Jing" sort="Li, Jing" uniqKey="Li J" first="Jing" last="Li">Jing Li</name><name sortKey="Li, Shaohua" sort="Li, Shaohua" uniqKey="Li S" first="Shaohua" last="Li">Shaohua Li</name><name sortKey="Peng, Junhua" sort="Peng, Junhua" uniqKey="Peng J" first="Junhua" last="Peng">Junhua Peng</name><name sortKey="Qiu, Wen Ming" sort="Qiu, Wen Ming" uniqKey="Qiu W" first="Wen-Ming" last="Qiu">Wen-Ming Qiu</name><name sortKey="Zhang, Qiong" sort="Zhang, Qiong" uniqKey="Zhang Q" first="Qiong" last="Zhang">Qiong Zhang</name><name sortKey="Zhou, Hui" sort="Zhou, Hui" uniqKey="Zhou H" first="Hui" last="Zhou">Hui Zhou</name><name sortKey="Zhu, Tingting" sort="Zhu, Tingting" uniqKey="Zhu T" first="Tingting" last="Zhu">Tingting Zhu</name></country><country name="États-Unis"><region name="Illinois"><name sortKey="Khan, Muhammad Awais" sort="Khan, Muhammad Awais" uniqKey="Khan M" first="Muhammad Awais" last="Khan">Muhammad Awais Khan</name></region><name sortKey="Korban, Schuyler S" sort="Korban, Schuyler S" uniqKey="Korban S" first="Schuyler S." last="Korban">Schuyler S. 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